Extra

Conda Syntax

Pip Syntax

Description

r

yggdrasil.r

n/a

Dependencies required to run models written in R as part of yggdrasil integrations

c

yggdrasil.c

n/a

Dependencies required to compile and run models written in C/C++ as part of yggdrasil integrations

fortran

yggdrasil.fortran

n/a

Dependencies required to compile and run models written in Fortran as part of yggdrasil integrations

julia

yggdrasil.julia

n/a

Dependencies required to run models written in R as part of yggdrasil integrations

lpy

yggdrasil.lpy

n/a

Dependencies required to run LPy models as part of yggdrasil integrations

mpi

yggdrasil.mpi

yggdrasil[mpi]

Dependencies required to run integrations as MPI parallel jobs

pytorch

yggdrasil.pytorch

yggdrasil[pytorch]

Dependencies required to run PyTorch models as part of yggdrasil integrations

sbml

yggdrasil.sbml

yggdrasil[sbml]

Dependencies required to run SBML models as part of yggdrasil integrations

zmq

yggdrasil.zmq

n/a

Dependencies required to run models using ZeroMQ sockets for communication in C/C++/Fortran

omp

yggdrasil.omp

n/a

Dependencies required to run integrations that use OpenMP

rmq

yggdrasil.rmq

yggdrasil[rmq]

Dependencies required to run integrations with RabbitMQ communication

images

yggdrasil.images

yggdrasil[images]

Dependencies required to perform I/O on common image files.

seq

yggdrasil.seq

yggdrasil[seq]

Dependencies required to handle sequence (nucleotide/protein) I/O

excel

yggdrasil.excel

yggdrasil[excel]

Dependencies required to read/write excel files

testing

yggdrasil.testing

yggdrasil[testing]

Dependencies required to run yggdrasil tests

docs

yggdrasil.docs

yggdrasil[docs]

Dependencies required to build yggdrasil docs

dev

yggdrasil.dev

yggdrasil[dev]

Dependencies recommended for yggdrasil development

astropy

yggdrasil.astropy

yggdrasil[astropy]

None

pygments

yggdrasil.pygments

yggdrasil[pygments]

None

trimesh

yggdrasil.trimesh

yggdrasil[trimesh]

None