.. _package_extras_rst:

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Extra      Conda Syntax         Pip Syntax            Description                             
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r          yggdrasil.r          n/a                   Dependencies required to run models     
                                                      written in R as part of |yggdrasil|     
                                                      integrations                            
c          yggdrasil.c          n/a                   Dependencies required to compile and run
                                                      models written in C/C++ as part of      
                                                      |yggdrasil| integrations                
fortran    yggdrasil.fortran    n/a                   Dependencies required to compile and run
                                                      models written in Fortran as part of    
                                                      |yggdrasil| integrations                
julia      yggdrasil.julia      n/a                   Dependencies required to run models     
                                                      written in R as part of |yggdrasil|     
                                                      integrations                            
lpy        yggdrasil.lpy        n/a                   Dependencies required to run LPy models 
                                                      as part of |yggdrasil| integrations     
mpi        yggdrasil.mpi        yggdrasil[mpi]        Dependencies required to run            
                                                      integrations as MPI parallel jobs       
pytorch    yggdrasil.pytorch    yggdrasil[pytorch]    Dependencies required to run PyTorch    
                                                      models as part of |yggdrasil|           
                                                      integrations                            
sbml       yggdrasil.sbml       yggdrasil[sbml]       Dependencies required to run SBML models
                                                      as part of |yggdrasil| integrations     
zmq        yggdrasil.zmq        n/a                   Dependencies required to run models     
                                                      using ZeroMQ sockets for communication  
                                                      in C/C++/Fortran                        
omp        yggdrasil.omp        n/a                   Dependencies required to run            
                                                      integrations that use OpenMP            
rmq        yggdrasil.rmq        yggdrasil[rmq]        Dependencies required to run            
                                                      integrations with RabbitMQ communication
images     yggdrasil.images     yggdrasil[images]     Dependencies required to perform I/O on 
                                                      common image files.                     
seq        yggdrasil.seq        yggdrasil[seq]        Dependencies required to handle sequence
                                                      (nucleotide/protein) I/O                
excel      yggdrasil.excel      yggdrasil[excel]      Dependencies required to read/write     
                                                      excel files                             
testing    yggdrasil.testing    yggdrasil[testing]    Dependencies required to run |yggdrasil|
                                                      tests                                   
docs       yggdrasil.docs       yggdrasil[docs]       Dependencies required to build          
                                                      |yggdrasil| docs                        
dev        yggdrasil.dev        yggdrasil[dev]        Dependencies recommended for |yggdrasil|
                                                      development                             
astropy    yggdrasil.astropy    yggdrasil[astropy]    None                                    
pygments   yggdrasil.pygments   yggdrasil[pygments]   None                                    
trimesh    yggdrasil.trimesh    yggdrasil[trimesh]    None                                    
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