Contents:

• Overview
• Installation
  • Conda Installation (recommended)
  • Manual Installation
  • User Defined rapidjson
  • Additional Steps on Windows
  • Additional Steps for Matlab Models
  • Additional Steps for RabbitMQ Message Passing
• Getting started
  • Running a model
  • Running multiple models
  • Model file input/output
  • Model-to-model communication (with connections)
  • Model-to-model communication (with drivers)
• Formatted I/O
  • Scalars
  • Tables by Row
  • Tables as Arrays
  • Tables as Pandas Data Frames
  • 3D Structures as Ply/Obj
  • Tables as Pandas Data Frames
  • Config style Mappings
  • JSON Files
  • YAML Files
• Server/Client I/O
  • One Server, One Client
• One Server, Two Clients
• YAML Files
  • Model Options
  • Communication Options
  • Connection Options
  • Validation
• Configuration Files
  • Debug Options
  • Windows Options
  • RabbitMQ Options
  • Parallel Options
• Units
• C-Style Format Strings
• Input/Output Drivers
  • File Input Drivers
  • File Output Drivers
  • General Input Drivers
  • General Output Drivers
  • Input/Output Drivers
• Model Drivers
• Model Interface
  • Python Interface
  • C Interface
  • C++ Interface
  • Matlab Interface
• JSON Metaschema
• YAML Validation Schema
• Code
  • Python Code
  • C Code
  • C++ Code
  • Matlab Code
• Examples
  • gs_lesson1 Example
  • gs_lesson2 Example
  • gs_lesson3 Example
  • gs_lesson4 Example
  • gs_lesson4b Example
  • formatted_io1 Example
  • formatted_io2 Example
  • formatted_io3 Example
  • formatted_io4 Example
  • formatted_io5 Example
  • formatted_io6 Example
  • formatted_io7 Example
  • formatted_io8 Example
  • formatted_io9 Example
  • rpc_lesson1 Example
  • rpc_lesson2 Example
• Release Steps
• Updating and Testing the Conda Recipe
• Docs Checkout
• Welcome to the 2018 Crops in Silico Hackathon!
  • Installation
  • Introduction
  • Model Transformation
  • Connecting Models to Models