Source code for yggdrasil.metaschema.datatypes.JSONArrayMetaschemaType

import numpy as np
import pandas as pd
from yggdrasil.metaschema.datatypes import generate_data
from yggdrasil.metaschema.datatypes.ContainerMetaschemaType import (

[docs]class JSONArrayMetaschemaType(ContainerMetaschemaType): r"""Type associated with a set of subtypes. Developer Notes: Support for dynamic arrays in C/C++ is still under development. """ name = 'array' description = 'A container of ordered values.' properties = ['items'] metadata_properties = ['items'] extract_properties = ['items'] python_types = (list, tuple, np.ndarray, pd.DataFrame) _replaces_existing = True _container_type = list _json_type = 'array' _json_property = 'items' _empty_msg = []
[docs] @classmethod def validate(cls, obj, raise_errors=False): r"""Validate an object to check if it could be of this type. Args: obj (object): Object to validate. raise_errors (bool, optional): If True, errors will be raised when the object fails to be validated. Defaults to False. Returns: bool: True if the object could be of this type, False otherwise. """ out = super(JSONArrayMetaschemaType, cls).validate( obj, raise_errors=raise_errors) if out and isinstance(obj, np.ndarray): out = (len(obj.dtype) > 0) if (not out) and raise_errors: raise ValueError("Array dosn't have a structured data type.") return out
[docs] @classmethod def normalize(cls, obj): r"""Normalize an object, if possible, to conform to this type. Args: obj (object): Object to normalize. Returns: object: Normalized object. """ if isinstance(obj, str): obj = [v.strip() for v in obj.split(',')] elif isinstance(obj, tuple): obj = list(obj) return obj
[docs] @classmethod def encode_type(cls, obj, **kwargs): r"""Encode an object's type definition. Args: obj (object): Object to encode. **kwargs: Additional keyword arguments are passed to the parent class's method. Returns: dict: Encoded type definition. """ names = None if isinstance(obj, pd.DataFrame): names = obj.columns if all([isinstance(n, int) for n in names]): names = None elif isinstance(obj, np.ndarray) and (len(obj.dtype) > 0): names = obj.dtype.names out = super(JSONArrayMetaschemaType, cls).encode_type(obj, **kwargs) if names is not None: assert 'items' in out assert len(out['items']) == len(names) for n, x in zip(names, out['items']): x.setdefault('title', n) return out
[docs] @classmethod def coerce_type(cls, obj, typedef=None, key_order=None, dont_wrap_single=False, **kwargs): r"""Coerce objects of specific types to match the data type. Args: obj (object): Object to be coerced. typedef (dict, optional): Type defintion that object should be coerced to. Defaults to None. key_order (list, optional): Order that keys from a dictionary should be used to compose an array. Defaults to None. dont_wrap_single (bool, optional): If True, single element data types will not attempt to wrap input object in additional list. Defaults to False. **kwargs: Additional keyword arguments are metadata entries that may aid in coercing the type. Returns: object: Coerced object. Raises: RuntimeError: If obj is a dictionary, but key_order is not provided. """ from yggdrasil.serialize import pandas2list, numpy2list, dict2list if isinstance(obj, pd.DataFrame): obj = pandas2list(obj) elif isinstance(obj, np.ndarray) and (len(obj.dtype) == 0): obj = [obj] elif isinstance(obj, np.ndarray) and (len(obj.dtype) > 0): obj = numpy2list(obj) elif isinstance(obj, dict): if (key_order is not None) or (len(obj) == 1): obj = dict2list(obj, order=key_order) elif (isinstance(typedef, dict) and isinstance(typedef.get('items', None), list) and all([('title' in x) for x in typedef['items']])): key_order = [x['title'] for x in typedef['items']] obj = dict2list(obj, order=key_order) else: obj = [obj] elif ((isinstance(typedef, dict) and (not dont_wrap_single) and (len(typedef.get('items', [])) == 1))): typedef_validated = kwargs.get('typedef_validated', False) try_obj = cls.coerce_type([obj], typedef=typedef, key_order=key_order, dont_wrap_single=True, **kwargs) if cls.check_decoded(try_obj, typedef, typedef_validated=typedef_validated): obj = try_obj return super(JSONArrayMetaschemaType, cls).coerce_type( obj, typedef=typedef, **kwargs)
@classmethod def _iterate(cls, container): r"""Iterate over the contents of the container. Each element returned should be a tuple including an index and a value. Args: container (obj): Object to be iterated over. Returns: iterator: Iterator over elements in the container. """ for k, v in enumerate(container): yield (k, v) @classmethod def _assign(cls, container, index, value): r"""Assign an element in the container to the specified value. Args: container (obj): Object that element will be assigned to. index (obj): Index in the container object where element will be assigned. value (obj): Value that will be assigned to the element in the container object. """ if len(container) > index: container[index] = value elif len(container) == index: container.append(value) else: raise RuntimeError("The container has %s elements and the index is %s" % (len(container), index)) @classmethod def _has_element(cls, container, index): r"""Check to see if an index is in the container. Args: container (obj): Object that should be checked for index. index (obj): Index that should be checked for. Returns: bool: True if the index is in the container. """ return (len(container) > index) @classmethod def _get_element(cls, container, index, default): r"""Get an element from the container if it exists, otherwise return the default. Args: container (obj): Object that should be returned from. index (obj): Index of element that should be returned. default (obj): Default that should be returned if the index is not in the container. Returns: object: Container contents at specified element. """ if isinstance(container, dict): assert 'type' in container return container return super(JSONArrayMetaschemaType, cls)._get_element( container, index, default) @classmethod def _generate_data(cls, typedef, **kwargs): r"""Generate mock data for the specified type. Args: typedef (dict): Type definition. Returns: object: Python object of the specified type. """ if isinstance(typedef[cls._json_property], dict): nitems = typedef.get('minItems', 1) out = cls._container_type() for i in range(nitems): cls._assign(out, i, generate_data(typedef[cls._json_property], **kwargs)) else: out = super(JSONArrayMetaschemaType, cls)._generate_data(typedef, **kwargs) return out
[docs] @classmethod def get_test_data(cls, typedef=None): r"""object: Test data.""" if typedef is None: typedef = { 'type': 'array', 'items': [ {'type': 'float', 'precision': 32, 'units': ''}, {'type': 'bytes', 'precision': 40, 'units': ''}, {'type': 'unicode', 'precision': 40, 'units': ''}, {'type': 'object', 'properties': {'nested': {'type': 'int', 'precision': 64, 'units': ''}}}, {'type': 'array', 'items': [{'type': 'complex', 'precision': 128, 'units': ''}, {'type': 'uint', 'precision': 8, 'units': ''}]}]} return super(JSONArrayMetaschemaType, cls).get_test_data(typedef)